Cody

Problem 2513. Genome decoding

Solution 1950125

Submitted on 26 Sep 2019 by Nikolaos Nikolaou
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Test Suite

Test Status Code Input and Output
1   Pass
user_solution = fileread('decode_genome.m'); assert(isempty(strfind(user_solution,'regexp'))); assert(isempty(strfind(user_solution,'str2num')));

2   Pass
genome = [ 228 24 40 36 167 231 71 248 107 9 32 140 245 234 217 233 0 124 202 239 161 247 204 255 173]; sequences = { 'GTCA' 'ACTA' 'ATTA' 'ATCA' 'TTCG' 'GTCG' 'CACG' 'GGTA' 'CTTG' 'AATC' 'ATAA' 'TAGA' 'GGCC' 'GTTT' 'GCTC' 'GTTC' 'AAAA' 'CGGA' 'GATT' 'GTGG' 'TTAC' 'GGCG' 'GAGA' 'GGGG' 'TTGC'}; assert(isequal(sequences, decode_genome(genome)));

sequences = 5×5 cell array {'GTCA'} {'ACTA'} {'ATTA'} {'ATCA'} {'TTCG'} {'GTCG'} {'CACG'} {'GGTA'} {'CTTG'} {'AATC'} {'ATAA'} {'TAGA'} {'GGCC'} {'GTTT'} {'GCTC'} {'GTTC'} {'AAAA'} {'CGGA'} {'GATT'} {'GTGG'} {'TTAC'} {'GGCG'} {'GAGA'} {'GGGG'} {'TTGC'}

3   Pass
genome = [1 4 16 64; 234 186 174 171]; sequences = {'AAAC' 'AACA' 'ACAA' 'CAAA'; 'GTTT' 'TGTT' 'TTGT' 'TTTG'}; assert(isequal(sequences, decode_genome(genome)));

sequences = 2×4 cell array {'AAAC'} {'AACA'} {'ACAA'} {'CAAA'} {'GTTT'} {'TGTT'} {'TTGT'} {'TTTG'}

4   Pass
genome = [228 225 216 210 198 201 180 177 156 147 135 141 108 99 120 114 78 75 39 45 27 30 54 57]'; sequences = {'GTCA' 'GTAC' 'GCTA' 'GCAT' 'GACT' 'GATC' 'TGCA' 'TGAC' 'TCGA' 'TCAG' 'TACG' 'TAGC' 'CTGA' 'CTAG' 'CGTA' 'CGAT' 'CAGT' 'CATG' 'ATCG' 'ATGC' 'ACTG' 'ACGT' 'AGCT' 'AGTC'}'; assert(isequal(sequences, decode_genome(genome)));

sequences = 24×1 cell array {'GTCA'} {'GTAC'} {'GCTA'} {'GCAT'} {'GACT'} {'GATC'} {'TGCA'} {'TGAC'} {'TCGA'} {'TCAG'} {'TACG'} {'TAGC'} {'CTGA'} {'CTAG'} {'CGTA'} {'CGAT'} {'CAGT'} {'CATG'} {'ATCG'} {'ATGC'} {'ACTG'} {'ACGT'} {'AGCT'} {'AGTC'}

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