MSKCC CGDS Cancer Genomics Toolbox

Versión 1.5.0.0 (23,9 KB) por Erik Larsson
Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio.
3.0
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1,9K descargas
Actualizado 19 sep 2013

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This toolbox provides direct access to cancer genomics data from within the MATLAB environment. The toolbox will query the Cancer Genomics Data Server Web API, provided by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center, and return data in a structured format.

A tutorial ('showdemo cgdstutorial') makes it easy to get started.

Citar como

Erik Larsson (2024). MSKCC CGDS Cancer Genomics Toolbox (https://www.mathworks.com/matlabcentral/fileexchange/31297-mskcc-cgds-cancer-genomics-toolbox), MATLAB Central File Exchange. Recuperado .

Compatibilidad con la versión de MATLAB
Se creó con R2009b
Compatible con cualquier versión
Compatibilidad con las plataformas
Windows macOS Linux
Categorías
Más información sobre Genomics and Next Generation Sequencing en Help Center y MATLAB Answers.
Agradecimientos

Inspiración para: MSKCC CGDS Cancer Genomics Toolbox v1.07

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Versión Publicado Notas de la versión
1.5.0.0

Version 1.06: Adapted to changes in web API (clinical data). Previous version no longer works correctly. Trailing '/' no longer required in URL. Updated URL in help pages. Updated tutorial for new clinical data format.

1.4.0.0

Bug fixes to cgdstutorial.m
1.3.0.0

Updates to comply with changed naming conventions for case set IDs and genetic profile IDs.

1.2.0.0

Minor update to cgdstutorial.m
1.1.0.0

v1.02 9/5/2011: Adapted to changes in web API.
1.0.0.0