Strategies for Efficient Use of Memory
This topic explains several techniques to use memory efficiently in MATLAB®.
Use Appropriate Data Storage
MATLAB provides you with different sizes of data classes, such as
uint8, so you do not need to use large classes to store your smaller segments of data. For example, it takes 7 KB less memory to store 1,000 small unsigned integer values using the
uint8 class than it does with
Use the Appropriate Numeric Class
The numeric class you should use in MATLAB depends on your intended actions. The default class
double gives the best precision, but requires 8 bytes per element of memory to store. If you intend to perform complicated math such as linear algebra, you must use a floating-point class such as a
single class requires only 4 bytes. There are some limitations on what you can do with the
single class, but most MATLAB Math operations are supported.
If you just need to carry out simple arithmetic and you represent the original data as integers, you can use the integer classes in MATLAB. The following is a list of numeric classes, memory requirements (in bytes), and the supported operations.
|Class (Data Type)||Bytes||Supported Operations|
|1||Arithmetic and some simple functions|
|2||Arithmetic and some simple functions|
|4||Arithmetic and some simple functions|
|8||Arithmetic and some simple functions|
Reduce the Amount of Overhead When Storing Data
MATLAB arrays (implemented internally as
mxArrays) require room to store meta information about the data in memory, such as type, dimensions, and attributes. This takes about 104 bytes per array. This overhead only becomes an issue when you have a large number (e.g., hundreds or thousands) of small
mxArrays (e.g., scalars). The
whos command lists the memory used by variables, but does not include this overhead.
Because simple numeric arrays (comprising one
mxArray) have the least overhead, you should use them wherever possible. When data is too complex to store in a simple array (or matrix), you can use other data structures.
Cell arrays are comprised of separate
mxArrays for each element. As a result, cell arrays with many small elements have a large overhead.
Structures require a similar amount of overhead per field. Structures with many fields and small contents have a large overhead and should be avoided. A large array of structures with numeric scalar fields requires much more memory than a structure with fields containing large numeric arrays.
Also note that while MATLAB stores numeric arrays in contiguous memory, this is not the case for structures and cell arrays. For more information, see How MATLAB Allocates Memory.
Import Data to the Appropriate MATLAB Class
When reading data from a binary file with
fread, it is a common error to specify only the class of the data in the file, and not the class of the data MATLAB uses once it is in the workspace. As a result, the default
double is used even if you are reading only 8-bit values. For example,
fid = fopen('large_file_of_uint8s.bin', 'r'); a = fread(fid, 1e3, 'uint8'); % Requires 8k whos a Name Size Bytes Class Attributes a 1000x1 8000 double a = fread(fid, 1e3, 'uint8=>uint8'); % Requires 1k whos a Name Size Bytes Class Attributes a 1000x1 1000 uint8
Make Arrays Sparse When Possible
If your data contains many zeros, consider using sparse arrays, which store only nonzero elements. The following example compares sparse and full storage requirements:
A = eye(1000); % Full matrix with ones on the diagonal As = sparse(A); % Sparse matrix with only nonzero elements whos Name Size Bytes Class Attributes A 1000x1000 8000000 double As 1000x1000 24008 double sparse
You can see that this array requires only about 24 KB to be stored as sparse,
but approximately 8 MB as a full matrix. In general, for a sparse double array
nnz nonzero elements and
columns, the memory required is:
nnz+ 8 *
ncol+ 8 bytes (on a 64-bit machine)
Note that MATLAB supports most, but not all, mathematical operations on sparse arrays.
Avoid Temporary Copies of Data
You can significantly reduce the amount of memory required by avoiding the creation of unnecessary temporary copies of data.
Avoid Creating Temporary Arrays
Avoid creating large temporary variables, and also make it a practice to clear temporary variables when they are no longer needed. For example, this code creates an array of zeros stored as a temporary variable
A, and then converts
A to single-precision:
A = zeros(1e6,1); As = single(A);
It is more memory efficient to use one command to do both operations:
A = zeros(1e6,1,'single');
Use Nested Functions to Pass Fewer Arguments
When working with large data sets, be aware that MATLAB makes a temporary copy of an input variable if the called function modifies its value. This temporarily doubles the memory required to store the array, which causes MATLAB to generate an error if sufficient memory is not available.
One way to use less memory in this situation is to use nested functions. A nested function shares the workspace of all outer functions, giving the nested function access to data outside of its usual scope. In the example shown here, nested function
setrowval has direct access to the workspace of the outer function
myfun, making it unnecessary to pass a copy of the variable in the function call. When
setrowval modifies the value of
A, it modifies it in the workspace of the calling function. There is no need to use additional memory to hold a separate array for the function being called, and there also is no need to return the modified value of
function myfun A = magic(500); setrowval(400,0) disp('The new value of A(399:401,1:10) is') A(399:401,1:10) function setrowval(row,value) A(row,:) = value; end end
Reclaim Used Memory
One simple way to increase the amount of memory you have available is to clear large arrays that you no longer use.
Save Your Large Data Periodically to Disk
If your program generates very large amounts of data, consider writing the data to disk periodically. After saving that portion of the data, use the
clear function to remove the variable from memory and continue with the data generation.
Clear Old Variables from Memory When No Longer Needed
When you are working with a very large data set repeatedly or interactively, clear the old variable first to make space for the new variable. Otherwise, MATLAB requires temporary storage of equal size before overriding the variable. For example,
a = rand(1e5); b = rand(1e5); Out of memory. More information clear a a = rand(1e5); % New array