BioMap bug (bioinformatics toolbox)

Hi,

I try to construct a BioMap structure from a BAM file. I use

info = baminfo(bamFilename,'ScanDictionary',true);
bm = BioMap(bamFilename, 'SelectReference', info.ScannedDictionary{chromosomeNo});

Eventhough baminfo shows a valid reference (info.ScannedDictionary) and a number of mapped reads (info.ScannedDictionaryCount) when I create the bm object, this has no reads inside. Only 1 chromosome out of 16 gives me this problem, so I don't understand what's happening...

Any help is appreciated. Thanks!

Razvan

Answer 1

[Razvan]

Probably I should close this question...

The bug was fixed in release 2012b. The support team sent me a dll file which fixes the bug in versions <= 2012a. If anyone has the same problem, I can send you the fixed dll, if you request it.