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Hi All,
I'm currently attempting to implement a Hodgkin-Huxley-type model of membrane potential, ideally I would like a species that represents the membrane potential as its own distinct entity, so as the reference elsewhere. I've currently established a molarity-based work around but it would be great if I could set the units for the species as millivolt, but that throws an error.
Is there an established way to do this? I imagine I'm not the first person to be trying to model a voltage-gated ion channel!
Thank you for your help.
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Hello,
I've looked around and I haven't found anything obvious about this, but is it possible to link to species/reactions, graphically, in a non-mass transfer sense? I have areas in my model where it would conceptually make sense to be able to see that species or reactions are linked, but if I link them in the standard way it demands that it be involved in the stoichiometry.
Perhaps some kind of dotted line, or similar?
Thank you, best regards,
Dan
I know the latest version of MATLAB R2023b has this feature already, put it should be added to R2023a as well because of its simplicity and convenience.
Basically, I want to make a bar graph that lets me name each column in a basic bar graph:
y=[100 99 100 200 200 300 500 800 1000];
x=["0-4" "5-17" "18-29" "30-39" "40-49" "50-64" "65-74" "75-84" "85+"];
bar(x,y)
However, in R2023a, this isn't a feature. I think it should be added because it helps to present data and ideas more clearly and professionally, which is the purpose of a graph to begin with.
Recently, I came across a post about the JIT compiler on this Korean blog. In the post. The writer discussed the concept of the "Compile Threshold" and how it is calculated.
"The JVM accumulates the number of calls for each method called and compiles when the number exceeds a certain number. In other words, there is a standard for checking how often it is called and then deciding, 'It is time to compile.' This standard is called the compilation threshold. But what is this and why should it be used as a standard?"
The concept of the "Compile Threshold," as used above, seems to be more commonly associated with Tracing just-in-time compilation.
The writer used the simple Java code below to calculate the threshold.
for (int i = 0; i < 500; ++i) {
long startTime = System.nanoTime();
for (int j = 0; j < 1000; ++j) {
new Object();
}
long endTime = System.nanoTime();
System.out.printf("%d\t%d\n", i, endTime - startTime);
}
Since the MATLAB execution engine uses JIT compilation, I just wanted to perform the same experiment that the writer did.
I experimented using simple codes based on the code in the blog. I iterated a function 500 time using for-loop and calculated the execution time for each iteration using tic and toc. Then I plotted the execution time for each loop as blow. First five execution times are much higher than followings (10 times!) The test is very rough so I am not sure that I can conclude "MATLAB has Compile Threshold and it is 5!" but this value is actually correct ;-)
t0 = 0;
tfinal = 10;
y0 = [20;20];
timeToRun = zeros(500,1);
for i = 1:500
tStart = tic;
[preypeaks,predatorpeaks] = solvelotka(t0, tfinal, y0);
tEnd = toc(tStart);
timeToRun(i) = tEnd;
end
VS Code Extension for MATLAB was introduced back in April and has been downloaded 75K times since. Do people here use VS Code for writing MATLAB code?
Would it be a good thing to have implicit expansion enabled for cat(), horzcat(), vertcat()? There are often situations where I would like to be able to do things like this:
x=[10;20;30;40];
y=[11;12;13;14];
z=cat(3, 0,1,2);
C=[x,y,z]
with the result,
C(:,:,1) =
10 11 0
20 12 0
30 13 0
40 14 0
C(:,:,2) =
10 11 1
20 12 1
30 13 1
40 14 1
C(:,:,3) =
10 11 2
20 12 2
30 13 2
40 14 2
Wait for Walter, the rest of us are mere users.
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