Ingrid Tigges
MathWorks
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DISCLAIMER: Any advice or opinions posted here are my own, and in no way reflect that of MathWorks.
Professional Interests: SimBiology, Bioinformatics, Graphics, GUIs
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Feeds
How to repeatedly assign the concentration to a species
The following describes how you can do a repeated assignment for a dataset. If you compare this to the link in my comment you wi...
alrededor de 9 años hace | 0
| aceptada
How can I use Matlab Compiler to make a stand alone script including simFunction Objects
Steven is right with respect to the link he is refering to. After the loading of your simfunction in your file TEST, you need th...
alrededor de 9 años hace | 0
| aceptada
Simbiology general stability and speed
I have simulated models with more than 150 reactions myself in SimBiology and this works without problem. Have you seen the "ac...
alrededor de 9 años hace | 1
| aceptada
How to drive model in simbiology from values on data file?
Do you want a kind of lookup table for your data? If yes you can do it as follows: 1) Create a repeated rule that calls an ex...
más de 9 años hace | 0
| aceptada
Error in sbmlimport - Conversion from SBML/XML to stochiometric matrix
Hi Namrata, The files from KEGG are not in the SBML format but in the KGML format (see <http://www.genome.jp/kegg/xml/ KGML s...
más de 9 años hace | 1
SimBiology and the parallel toolbox
Have a look at this link <http://www.mathworks.com/matlabcentral/answers/93471-is-it-possible-to-use-simbiology-model-objects-wi...
más de 9 años hace | 1
bug: extra space before greek letter if rendered with painters
There is a workaround for this issue. Due to the disadvantages of the workaround, please contact technical support in order to g...
más de 9 años hace | 0
How can I define a time-dependent reaction rate for an SIR model in Simbiology
Hello Nicolas, You can use rate rules to define parameters that are dependent on time. This link of the documentation explain...
más de 9 años hace | 1
Find the steady states of a system.
Given that the steady state is defined as dx/dt=0 which is approximately delta x/delta t you can check whether the difference in...
casi 10 años hace | 0
Triggering Events In SimBiology toolbox
I have attached a .zip file which contains a .sbproj file with a small example. In this example species_1 is created with consta...
alrededor de 10 años hace | 1
| aceptada
How to load simbiology project object and children from m file?
Hello Zetty, in your code you are using the line simData = sbiosimulate(m1, cs, Dose) ; This way you create a S...
más de 10 años hace | 1
| aceptada
crash at pcolor, surf, etc..
Don't be afraid to ask technical support in those cases. In worst case the answer will be sorry, you do not have a license with ...
más de 10 años hace | 0
| aceptada
Concentration in each compartment at a fixed time
Hi Rakesh, Since I do not know whether you are using the SimBiology Desktop, let me explain the Desktop and Command Line appr...
más de 10 años hace | 0
SimBiology calling a function
Have a look at the attached code. simbiology_ml_answers is the main script. The steps are as follows: * Get species names w...
más de 10 años hace | 0
simbiology competition and inhibition
You can find an explanation on how to fit parameters that should be within certain limits here: <http://www.mathworks.com/matlab...
alrededor de 11 años hace | 0
simbiology competition and inhibition
Hi, here are my quick replies to your questions: 1) Create the reaction as you normally do in the SimBiology desktop and then...
alrededor de 11 años hace | 0
Estimate global and local parameters
You can find an example explaining the combination of pooled (global) and unpooled (local) parameters here <http://www.mathworks...
alrededor de 11 años hace | 0
| aceptada
Newbie questions in Simbiology
I am not sure how much I can help you with your first two questions, but let me help you with the other three. There is no need...
alrededor de 11 años hace | 1
Simbiology simulation and fit tasks give different outputs
Are you sure that you are using the same simulation settings, initial values etc. in both situations? It might be worth contacti...
alrededor de 11 años hace | 1
| aceptada
Regarding PK modelling in Simbiology!
Hi, I do not know your model so keep this in mind when reading my answers. 1) In a typical PK model, the input is likely to ...
alrededor de 11 años hace | 0
| aceptada
Diagram layout in Simbiology
The issue you describe is an issue of "forward compatibility". To my best knowledge MathWorks trys to ensure that projects from ...
alrededor de 11 años hace | 2
| aceptada
Upper limit or saturation
Should the upper limit come into play when running a simulation? In this case, you could set the upper limit using an event. Ha...
alrededor de 11 años hace | 1
| aceptada
Resuelto
Pascal's Triangle
Given an integer n >= 0, generate the length n+1 row vector representing the n-th row of <http://en.wikipedia.org/wiki/Pascals_t...
alrededor de 11 años hace
Resuelto
Cell joiner
You are given a cell array of strings and a string delimiter. You need to produce one string which is composed of each string fr...
alrededor de 11 años hace
Resuelto
Which values occur exactly three times?
Return a list of all values (sorted smallest to largest) that appear exactly three times in the input vector x. So if x = [1 2...
alrededor de 11 años hace
Resuelto
Summing digits
Given n, find the sum of the digits that make up 2^n. Example: Input n = 7 Output b = 11 since 2^7 = 128, and 1 + ...
alrededor de 11 años hace
Resuelto
Return the 3n+1 sequence for n
A Collatz sequence is the sequence where, for a given number n, the next number in the sequence is either n/2 if the number is e...
alrededor de 11 años hace
Resuelto
Find the numeric mean of the prime numbers in a matrix.
There will always be at least one prime in the matrix. Example: Input in = [ 8 3 5 9 ] Output out is 4...
alrededor de 11 años hace
Resuelto
Create times-tables
At one time or another, we all had to memorize boring times tables. 5 times 5 is 25. 5 times 6 is 30. 12 times 12 is way more th...
alrededor de 11 años hace
Resuelto
Make a checkerboard matrix
Given an integer n, make an n-by-n matrix made up of alternating ones and zeros as shown below. The a(1,1) should be 1. Example...
alrededor de 11 años hace
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