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SimBiology Apps

Interactive apps to facilitate building, simulating, and analyzing dynamic systems

SimBiology provides a set of integrated apps that are designed to facilitate building, simulating, and analyzing models of dynamic systems such as quantitative systems pharmacology (QSP), pharmacokinetic/pharmacodynamic (PK/PD) and systems biology models.

  • The SimBiology Model Builder app lets you build dynamic models interactively using various modeling elements. For instance, you can model a variety of biological systems such as signaling pathways, metabolic networks, PBPK, QSP, and PK/PD models. It also lets you model biological variability and different dosing regimens to investigate various experimental conditions and dosing strategies.

  • The SimBiology Model Analyzer app lets you perform analyses on models of dynamic systems. You can simulate the dynamic behavior of a model using various solvers and estimate model parameters. To investigate system dynamics and guide experimentation, you can perform sensitivity analysis and parameter sweeps.

Apps

SimBiology Model BuilderBuild QSP, PK/PD, and mechanistic systems biology models interactively (Since R2020b)
SimBiology Model AnalyzerAnalyze QSP, PK/PD, and mechanistic systems biology models (Since R2019b)

Functions

simbiologyOpen SimBiology Model Builder
simbio.diagram.getBlock Get SimBiology diagram block properties (Since R2021a)
simbio.diagram.setBlock Set SimBiology diagram block properties (Since R2021a)
simbio.diagram.getLine Get SimBiology diagram line properties (Since R2021a)
simbio.diagram.setLine Set SimBiology diagram line properties (Since R2021a)
simbio.diagram.splitBlock Split SimBiology species block in diagram (Since R2021a)
simbio.diagram.joinBlock Combine copies of SimBiology species block in diagram (Since R2021a)

Topics

Build Models

Analyze Models and Data