File Formats in Bioinformatics Toolbox
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I'm interested in trying the bioinformatics toolbox. Is there a way to load a .vcf file into this toolbox, such as those generated from the 1000 Genomes Project? My own data is in Plink bed/bim/fam format, which would also be convenient to load in, although I can convert this to the standard .vcf.
Respuestas (2)
Walter Roberson
el 24 de Oct. de 2017
1 voto
https://github.com/neurospin/plinkio is a python package for reading that format, that you could probably call from MATLAB.
Achal Mahajan
el 1 de Jun. de 2022
Editada: Achal Mahajan
el 1 de Jun. de 2022
0 votos
Hi Hary,
It depends on what kind of analysis you are interested in, but genomics viewer does support .vcf format (link).
-Achal
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Más información sobre Genomics and Next Generation Sequencing en Centro de ayuda y File Exchange.
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