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using variables in a parfor loop

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Marc Laub
Marc Laub on 9 Nov 2019
Edited: Marc Laub on 10 Nov 2019
Hey, I am very new to the parallel computing and i got some trouble.
So basicly i have so example code very similar to this one:
a = (normrnd(1,1,[100000,1]))+5;
i=0;
while i<=10000
for j=1:length(a)
a(j)=a(j)+1/a(j);
end
i=i+1;
end
Inside the nested for loop are many more alculations which takes a huge amount of time, so i basically want to cut a into as much pieces as i have physical cores, so in this case 4 *20000 and then do the same calculations of thos 20000 arrays parrallel.
But I direclty get some error cause i cannot use my input variable from outside the parfor loop because of classification (Code without the outside while loop)
parfor i=1:cores
v=d(:,i);
v=v(v>0);
lim=size(v,1);
for j=1:lim
v(j)=v(j)+1/v(j);
end
d(1:length(v),i)=v;
end
Shouldnt my input d (20000x4 array) not work as an broadcast variable as defined in https://de.mathworks.com/help/parallel-computing/troubleshoot-variables-in-parfor-loops.html ?
Or am I missanderstanding something very basic in parallel computing?
Many thanks in advance
Best regards

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Answers (1)

Daniel M
Daniel M on 9 Nov 2019
I think it's because you're using d as the source and the sink in your loop, and you're assigning to d in a way that can make practically anything happen to the size of d, on different iterations. For example, what if on the first iteration d(:,i) contains no zeros, but on the second one it contains all zeros. Then 1:length(v) is changing every iteration and makes assignment to d impossible to determine a priori.

  2 Comments

Walter Roberson
Walter Roberson on 10 Nov 2019
If so then,
parfor i=1:cores
v=d(:,i);
vc = v;
v=v(v>0);
v = v + 1./v; %optimized out loop
vc(1:length(v)) = v;
d(:,i)=v;
end
Note that if your non-zeros are not consecutive that this can result in entries that were 0 being populated. [1 2 0 3] would be replaced with [1+1/1, 2+1/2, 3+1/3, 3] for example. It is not obvious that is what you would want.
Marc Laub
Marc Laub on 10 Nov 2019
d can contain zeros and if so its only the last element, in cases when my total number in a cannot be eveny distributed on my workers without reminder. So in the case of 101 elements i want to calculate 26 on worker 1 and 25 on the other 3.
It is not important in which order the 25 or 26 elements in each arrays are calculatet, but it is very important taht i know a prior wihc elements are calculated by which worker.
So i want to be basically be like this:
num_workers =4;
a = (normrnd(1,1,[100000,1]))+5;
i=0;
while i<=10000
b=randperm(length(a),length(a));
a=a(b);
d=reshape(a,[25000,num_workers]);
for k=1:num_workers
c=d(:,k);
for j=1:length(c)
c(j)=c(j)+1/c(j);
end
d(:,k)=c;
end
a=reshape(d,numel(d),1);
i=i+1;
end
but with the inner for loop k=1:4 run parallel instead of serial since the 4 arrays in d are independend.
How is this possible?
Edit: I think spmd is what i should be looking for but for beginners the examples or help is not very detailed i think.

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